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Schema
Citing CMDGA
Clear Filters
Embeddings type
3
Accessible chromatin
2
Gene expression
Cohort
1
HPAP
Embeddings Category
5
umap
Underlying Assay
1
10X scATAC-seq
1
10X scRNA-seq
1
10X snATAC-seq
1
10X snRNA-seq
1
sciATAC-seq
Available data
3
h5ad
1
bed bed3
1
cloupe
1
mtx
1
rds
1
tbi
1
tsv
File set status
5
released
Genome assembly (visualization)
1
hg19
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
2
islet of Langerhans
1
carotid canal
1
heart
1
pancreas
Tissue term
3
pancreas
skeletal muscle tissue
1
carotid canal
1
heart
Organ
3
pancreas
1
bone element
Life stage
adult
Date released
1
February, 2021
1
March, 2023
1
March, 2024
1
May, 2022
1
September, 2020
Software used
1
cellranger-atac
1
r
Lab
3
Kyle Gaulton, UCSD
2
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
2
LungMap2
2
T1D
1
ENCODE3
tissue_term_name!
skeletal muscle tissue
relevant_life_stage!
adult
Showing 5 of 5 results
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FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR692HQS
released
Embeddings file set
: Reference map of islet cell type-specific gene expression from 192,203 cells derived from single cell RNA-seq assays of 65 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR132DPW
released
Embeddings file set
: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR758NPF
released
Embeddings file set
: snRNA-seq embedding on nuclei isolated from cardiac chambers from four human donors without cardiovascular pathology
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP