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Assay
  • 9ChIP-seq
  • 7ATAC-seq
  • 7RNA-seq
  • 4Mint-ChIP-seq
  • 3DNase-seq
  • 2single cell isolation followed by RNA-seq
  • 1whole genome sequencing assay
Pipeline status
  • 7active
Pipeline groups
  • 1A short overview of the main analysis steps for eQTL Catalogue
  • 1RNA-seq Pipeline (Paired-ended, ENCODE)
  • 1RNA-seq Pipeline (Single-ended, ENCODE)
  • 1RNA-seq Pipeline 2 (Paired-ended, ENCODE)
  • 1RNA-seq Pipeline 2 (Single-ended, ENCODE)
  • 1RNA-seq Pipeline Cebola Lab
  • 1RNA-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
Developed by
  • 5AMP-T2D consortium
  • 1Ines Cebola, Imperial College London
  • 1Kyle Gaulton, UCSD

Showing 7 of 7 results

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  • Pipeline

    DPL005RCG

    active

    A short overview of the main analysis steps for eQTL Catalogue
    Assays: RNA-seq, whole genome sequencing assay
    Software:
  • Pipeline

    DPL269LNG

    active

    RNA-seq Pipeline 2 (Single-ended, ENCODE)
    Assays: RNA-seq
    Software:
  • Pipeline

    DPL009OFN

    active

    RNA-seq Pipeline 2 (Paired-ended, ENCODE)
    Assays: RNA-seq
    Software:
  • Pipeline

    DPL172PKH

    active

    RNA-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
    Assays: RNA-seq
    Software:
  • Pipeline

    DPL450NWL

    active

    RNA-seq Pipeline Cebola Lab
    Assays: RNA-seq
    Software:
  • Pipeline

    DPL610SXT

    active

    RNA-seq Pipeline (Paired-ended, ENCODE)
    Assays: RNA-seq
    Software:
  • Pipeline

    DPL610SXTsingleended

    active

    RNA-seq Pipeline (Single-ended, ENCODE)
    Assays: RNA-seq
    Software:
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