Showing 7 of 7 results

• Pipeline

  DPL005RCG

  active

  A short overview of the main analysis steps for eQTL Catalogue

  Assays: RNA-seq, whole genome sequencing assay

  Software: RNA-seq quantification: eQTL-Catalogue/rnaseq, Gene expression QC and normalisation: eQTL-Catalogue/qcnorm, Genotype QC and imputation: eQTL-Catalogue/genimpute, Association testing and fine mapping: eQTL-Catalogue/qtlmap

• Pipeline

  DPL269LNG

  active

  RNA-seq Pipeline 2 (Single-ended, ENCODE)

  Assays: RNA-seq

  Software: RNA pipelines, lrna-index-tophat, TopHat, Bowtie 2, lrna-align-tophat-se, Concat-fastq, Samtools, lrna-signals-unstranded, bedGraphToBigWig, STAR, lrna-signals, lrna-index-star, lrna-index-rsem, RSEM, lrna-align-star-se, lrna-quantification, lrna-mad-qc, Median Absolute Deviation

• Pipeline

  DPL009OFN

  active

  RNA-seq Pipeline 2 (Paired-ended, ENCODE)

  Assays: RNA-seq

  Software: RNA pipelines, lrna-index-tophat, TopHat, Bowtie 2, lrna-align-tophat-pe, Concat-fastq, Tophat BAM Repair, lrna-signals, bedGraphToBigWig, STAR, lrna-signals-stranded, lrna-index-star, lrna-index-rsem, RSEM, lrna-align-star-pe, Samtools, lrna-quantification, lrna-mad-qc, Median Absolute Deviation

• Pipeline

  DPL172PKH

  active

  RNA-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953

  Assays: RNA-seq

  Software: STAR, RSEM

• Pipeline

  DPL450NWL

  active

  RNA-seq Pipeline Cebola Lab

  Assays: RNA-seq

  Software: fastp, STAR, SALMON, Samtools, deepTools

• Pipeline

  DPL610SXT

  active

  RNA-seq Pipeline (Paired-ended, ENCODE)

  Assays: RNA-seq

  Software: STAR, bedGraphToBigWig, RSEM

• Pipeline

  DPL610SXTsingleended

  active

  RNA-seq Pipeline (Single-ended, ENCODE)

  Assays: RNA-seq

  Software: STAR, RSEM, bedGraphToBigWig