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Assay
8
ChIP-seq
7
ATAC-seq
7
RNA-seq
3
DNase-seq
3
Mint-ChIP-seq
2
single cell isolation followed by RNA-seq
1
whole genome sequencing assay
Pipeline status
5
active
Pipeline groups
1
Annotation pipeline popularVote (popV for short) from Tabula Sapiens
1
Histone ChIP-seq Pipeline 2 (ENCODE replicated)
1
Histone ChIP-seq Pipeline 2 (ENCODE unreplicated)
1
Pseudo-bulk gene expression and differential activity (Elgamal et al.)
1
TF ChIP-seq Pipeline 2 (ENCODE replicated)
TF ChIP-seq Pipeline 2 (ENCODE unreplicated)
Developed by
4
AMP-T2D consortium
1
Kyle Gaulton, UCSD
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TF ChIP-seq Pipeline 2 (ENCODE unreplicated)
Showing 5 of 5 results
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Pipeline
DPL066WNI
active
Pseudo-bulk gene expression and differential activity (Elgamal et al.)
Assays:
single cell isolation followed by RNA-seq
Pipeline
DPL472KCS
active
Annotation pipeline popularVote (popV for short) from Tabula Sapiens
Assays:
single cell isolation followed by RNA-seq
Pipeline
DPL935TZE
active
TF ChIP-seq Pipeline 2 (ENCODE replicated)
Assays:
ChIP-seq, Mint-ChIP-seq
Software:
Pipeline
DPL721SCW
active
Histone ChIP-seq Pipeline 2 (ENCODE unreplicated)
Assays:
ChIP-seq, Mint-ChIP-seq
Software:
Pipeline
DPL064PJG
active
Histone ChIP-seq Pipeline 2 (ENCODE replicated)
Assays:
ChIP-seq, Mint-ChIP-seq
Software: