Search – Common Metabolic Diseases Genome Atlas

Showing 23 of 23 results

Publication
released
An integrated map of cell type-specific gene expression in pancreatic islets
Ruth M Elgamal, Parul Kudtarkar, Rebecca L Melton, et al.
Diabetes. 2023-15-08;(db230130)
- PMID:37582230
- doi:10.2337/db23-0130
Publication
released
Human prefrontal cortex gene regulatory dynamics from gestation to adulthood at single-cell resolution
Charles A Herring, Rebecca K Simmons, Saskia Freytag, et al.
Cell. 2022-10-31;185(23):4428-4447.
- doi:10.1016/j.cell.2022.09.039
- PMID:36318921
Available supplemental data: website
File format: other format
URL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE168408
Data summary: Single-nuclei RNA-seq and single-nuclei ATAC-seq data have been deposited at GEO under accession…
Available supplemental data: website
URL: http://brain.listerlab.org/
Data summary: Accompanying interactive browsers for this study are available at http://brain.listerlab.org.
Available supplemental data: website
URL: http://development.psychencode.org/
Data summary: All data for the Velmeshev et al. study is publicly available through the Sequence Read Archive,…
Available supplemental data: website
URL: https://www.sciencedirect.com/science/article/pii/S0092867422012582?via%3Dihub#sec4.1
Data summary: All original code has been deposited at Zenodo and is publicly available as of the date of…
Available supplemental data: website
URL: https://www.sciencedirect.com/science/article/pii/S0092867422012582?via%3Dihub#sec4.2.1
Data summary: Any additional information required to reanalyze the data reported in this work paper is available…
Publication
released
Proper acquisition of cell class identity in organoids allows definition of fate specification programs of the human cerebral cortex
Ana Uzquiano, Amanda J Kedaigle, Martina Pigoni, et al.
Cell. 2022-09-29;185(20):3770-3788.e27.
Available supplemental data: website
URL: https://www.synapse.org
Data summary: Read-level data from scRNA-seq, scATAC-seq, SHARE-seq, and Slide-seq data, supporting the findings…
Available supplemental data: website
URL: https://singlecell.broadinstitute.org/single_cell/study/SCP1756
Data summary: The count-level data and meta-data have been deposited at the Single Cell Portal.
Available supplemental data: website
URL: https://doi.org/10.17632/7cxccpv4hg.1
Data summary: Supplemental data related to Figures 1, ,3,3, ,4,4, ,5,5, ,6,6, and and77 has been deposited…
Available supplemental data: website
URL: https://github.com/AmandaKedaigle/OrganoidAtlas
Data summary: Code used during data analysis is available at GitHub. d Any additional information required to…
Available supplemental data: website
URL: http://solo.bmap.ucla.edu/shiny/webapp/
Data summary: Data from previous publications that was used in this study can be found at the Gene Expression…
Publication
released
Non-cell-autonomous disruption of nuclear architecture as a potential cause of COVID-19-induced anosmia
Marianna Zazhytska, Albana Kodra, Daisy A Hoagland, et al.
Cell. 2022-03-17;185(6):1052-1064.e12.
Available supplemental data: website
URL: https://doi.org/10.1101/2021.02.09.430314
Data summary: Human and hamster RNAseq, scRNAseq, in situ HiC, supplemental spreadsheets and detailed…
Data summary: This study did not generate custom computer code. Any additional information is available from…
Publication
released
A single-cell atlas of chromatin accessibility in the human genome
Kai Zhang, James D. Hocker, Michael Miller, et al.
Cell. 2021-11-08;S0092-8674(21):01279-4.
Available supplemental data: website
File format: other format
URL: https://cmdga.org/publications/424edf8e-b0ab-4dfd-b61c-a68aae175e03/
Data summary: sci-ATAC-seq data of human lung samples: dbGaP: phs001961
Available supplemental data: website
File format: other format
URL: https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs002204.v1.p1
Data summary: sci-ATAC-seq data of human heart samples: dbGaP: phs002204
Available supplemental data: website
File format: other format
URL: https://cmdga.org/publications/1c27d047-15bc-46ac-bf94-e8881474d541/
Data summary: sci-ATAC-seq data of human islet samples: GEO: GSE160472
Available supplemental data: website
File format: other format
URL: https://cmdga.org/publications/7b1307ba-fbf9-4461-8c59-f8a65ee5379f/
Data summary: sci-ATAC-seq data of human fetal tissues:…
Available supplemental data: website
File format: other format
URL: https://cmdga.org/publications/1d94a4be-f51d-4f82-a84c-414193b0b2e3/
Data summary: sci-ATAC-seq data of human fetal tissues:…
Available supplemental data: website
File format: other format
URL: https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs002003.v1.p1
Data summary: sci-ATAC-seq data of human fetal tissues:…
Available supplemental data: website
File format: other format
URL: https://descartes.brotmanbaty.org/bbi/human-chromatin-during-development/
Data summary: Human chromatin accessibility during development
Publication
released
Chromatin and gene-regulatory dynamics of the developing human cerebral cortex at single-cell resolution
Alexandro E Trevino, Fabian Müller, Jimena Andersen, et al.
Cell. 2021-09-16;184(19):5053-5069.
- doi:10.1016/j.cell.2021.07.039
- PMID:34390642
Available supplemental data: website
URL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE162170
Data summary: Data used for the analyses presented in this work are available under GEO: GSE162170 and on a…
Available supplemental data: website
URL: https://github.com/GreenleafLab/Brain_ASD
Data summary: BPNet code can be found at GitHub.
Available supplemental data: website
URL: https://scbrainregulation.su.domains/
Data summary: A supplementary website with references to the data, code repositories and tools for interactive…
Publication
released
A Transcription Start Site Map in Human Pancreatic Islets Reveals Functional Regulatory Signatures
Arushi Varshney, Yasuhiro Kyono, Venkateswaran Ramamoorthi Elangovan, et al.
Diabetes. 2021-04-13;(db201087)
- doi:10.2337/db20-1087
- PMID:33849996
Publication
released
Evolutionary Selection and Constraint on Human Knee Chondrocyte Regulation Impacts Osteoarthritis Risk
Daniel Richard, Zun Liu, Jiaxue Cao, et al.
Cell. 2020-04-16;181(2):362-381.
URL: https://www.sciencedirect.com/science/article/abs/pii/S0092867420302348
Publication
released
Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization
Elizabeth H Finn, Gianluca Pegoraro, Hugo B Brandão, et al.
Cell. 2019-03-07;176(6):1502-1515.e10.
Data summary: The Hi-C data has been deposited in GEO under ID code GSE107051, and in the 4D Nucleome data…
Publication
released
Impact of Genetic Polymorphisms on Human Immune Cell Gene Expression
Benjamin J Schmiedel, Divya Singh, Ariel Madrigal, et al.
Cell. 2018-11-29;175(6):1701-1715.e16.
Publication
released
Type 2 Diabetes–Associated Genetic Variants Regulate Chromatin Accessibility in Human Islets
Shubham Khetan, Romy Kursawe, Ahrim Youn, et al.
Diabetes. 2018-11-01;67:2466–2477.
- doi:10.2337/db18-0393
- PMID:30181159
URL: https://diabetes.diabetesjournals.org/content/67/11/2466
Publication
released
Glucose-Induced Changes in Gene Expression in Human Pancreatic Islets: Causes or Consequences of Chronic Hyperglycemia
Emilia Ottosson-Laakso, Ulrika Krus, Petter Storm, et al.
Diabetes. 2017-12-01;66(12):3013-3028.
- doi:10.2337/db17-0311
- PMID:28882899
Publication
released
Single-Cell Analysis of Human Pancreas Reveals Transcriptional Signatures of Aging and Somatic Mutation Patterns
Martin Enge, H. Efsun Arda, Marco Mignardi, et al.
Cell. 2017-10-05;171(2):321-330.
- doi:10.1016/j.cell.2017.09.004
- PMID:28965763
Publication
released
A Loss-of-Function Splice Acceptor Variant in IGF2 Is Protective for Type 2 Diabetes
Josep M Mercader, Rachel G Liao, Avery D Bell, et al.
Diabetes. 2017-08-24;66(11):2903-2914.
Publication
released
Type 2 Diabetes Variants Disrupt Function of SLC16A11 through Two Distinct Mechanisms
Victor Rusu, Eitan Hoch, Josep M Mercader, et al.
Cell. 2017-06-29;170(1):199-212.e20.
Publication
released
β-Glucan Reverses the Epigenetic State of LPS-Induced Immunological Tolerance
Boris Novakovic, Ehsan Habibi, Shuang-Yin Wang, et al.
Cell. 2016-11-17;167(5):1354-1368.e14.
Publication
released
Genetic Drivers of Epigenetic and Transcriptional Variation in Human Immune Cells
Chen L, Ge B, Casale FP, et al.
Cell. 2016-11-17;167(5):1398-1414.
Publication
released
Genetic Ancestry and Natural Selection Drive Population Differences in Immune Responses to Pathogens
Yohann Nédélec, Joaquín Sanz, Golshid Baharian, et al.
Cell. 2016-10-20;167(3):657-669.e21.
- doi:10.1016/j.cell.2016.09.025
- PMID:27768889
Publication
released
Single-Cell Transcriptomics of the Human Endocrine Pancreas
Yue J. Wang, Jonathan Schug, Kyoung-Jae Won, et al.
Diabetes. 2016-10-01;65(10):3028-38.
- doi:10.2337/db16-0405
- PMID:27364731
Publication
released
Genetic Variation Determines PPARγ Function and Anti-diabetic Drug Response In Vivo
Raymond E. Soccio, Eric R. Chen, Satyajit R. Rajapurkar, et al.
Cell. 2015-07-02;162(1):33-44.
- doi:10.1016/j.cell.2015.06.025
- PMID:26140591
Publication
released
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
Suhas S.P. Rao, Miriam H. Huntley, Neva C. Durand, et al.
Cell. 2014-12-18;159(7):1665-1680.
- doi:10.1016/j.cell.2014.11.021
- PMID:25497547
URL: https://www.cell.com/cell/fulltext/S0092-8674(14)01497-4
Publication
released
Comparative Epigenomic Analysis Of Murine And Human Adipogenesis
Tarjei S. Mikkelsen, Zhao Xu, Xiaolan Zhang, et al.
Cell. 2010-10-01;143(1):156-169.
- doi:10.1016/j.cell.2010.09.006
- PMID:20887899
Publication
released
A Whole-Genome RNA Interference Screen Reveals a Role for Spry2 in Insulin Transcription and the Unfolded Protein Response
Zachary Pappalardo, Deeksha Gambhir Chopra, Thomas G Hennings, et al.
Diabetes. 2017-02-28;66(6):1703-1712.

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Showing 23 of 23 results