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Showing 25 of 38 results
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Yiwei Lai, Ignacio Ramírez-Pardo, Joan Isern, et al.
Nature. 2024-04-22;
Data summary: All raw data have been deposited to CNGB Nucleotide Sequence Archive (CNP0004394, CNP0004395,…Data summary: All processed data are available at the Human Muscle Ageing Cell Atlas database.Data summary: All data were analysed using standard programs and packages, as described in the Methods. Custom…Data summary: Analysis of the generated data82.Publication
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Fan Zhang, Anna Helena Jonsson, Aparna Nathan, et al.
Nature. 2023-11-08;623(7987):616-624.
Data summary: CITE-seq single-cell expression matrices and sequencing and bulk expression matrices are available…Data summary: Associated genotype and clinical data are available through the Arthritis and Autoimmune and…Data summary: A cell browser website is available to visualize our data and results.Data summary: AMP Phase 1 single-cell data from ref. 8 are available on Immport (SDY998). PEAC clinical trial…Data summary: The source code for the analyses is available at GitHubData summary: The source code for the analyses is available at zenodoPublication
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Charles A Herring, Rebecca K Simmons, Saskia Freytag, et al.
Cell. 2022-10-31;185(23):4428-4447.
Available supplemental data: websiteFile format: other formatData summary: Single-nuclei RNA-seq and single-nuclei ATAC-seq data have been deposited at GEO under accession…Available supplemental data: websiteData summary: Accompanying interactive browsers for this study are available at http://brain.listerlab.org.Available supplemental data: websiteData summary: All data for the Velmeshev et al. study is publicly available through the Sequence Read Archive,…Available supplemental data: websiteData summary: All original code has been deposited at Zenodo and is publicly available as of the date of…Available supplemental data: websiteData summary: Any additional information required to reanalyze the data reported in this work paper is available…Publication
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Ana Uzquiano, Amanda J Kedaigle, Martina Pigoni, et al.
Cell. 2022-09-29;185(20):3770-3788.e27.
Available supplemental data: websiteData summary: Read-level data from scRNA-seq, scATAC-seq, SHARE-seq, and Slide-seq data, supporting the findings…Available supplemental data: websiteData summary: The count-level data and meta-data have been deposited at the Single Cell Portal.Available supplemental data: websiteData summary: Supplemental data related to Figures 1, ,3,3, ,4,4, ,5,5, ,6,6, and and77 has been deposited…Available supplemental data: websiteData summary: Code used during data analysis is available at GitHub. d Any additional information required to…Available supplemental data: websiteData summary: Data from previous publications that was used in this study can be found at the Gene Expression…Publication
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Daniel J Emerson # 1 2 3 , Peiyao A Zhao # 4 , Ashley L Cook # 1 2 3 , et al.
Nature. 2022-06-08;606(7915):812-819.
Data summary: All new raw data created in this manuscript have been uploaded to the 4D Nucleome portal and will…Publication
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Marianna Zazhytska, Albana Kodra, Daisy A Hoagland, et al.
Cell. 2022-03-17;185(6):1052-1064.e12.
Available supplemental data: websiteData summary: Human and hamster RNAseq, scRNAseq, in situ HiC, supplemental spreadsheets and detailed…Data summary: This study did not generate custom computer code. Any additional information is available from…Publication
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Kai Zhang, James D. Hocker, Michael Miller, et al.
Cell. 2021-11-08;S0092-8674(21):01279-4.
Available supplemental data: websiteFile format: other formatData summary: sci-ATAC-seq data of human lung samples: dbGaP: phs001961Available supplemental data: websiteFile format: other formatData summary: sci-ATAC-seq data of human heart samples: dbGaP: phs002204Available supplemental data: websiteFile format: other formatData summary: sci-ATAC-seq data of human islet samples: GEO: GSE160472Available supplemental data: websiteFile format: other formatData summary: sci-ATAC-seq data of human fetal tissues:…Available supplemental data: websiteFile format: other formatData summary: sci-ATAC-seq data of human fetal tissues:…Available supplemental data: websiteFile format: other formatData summary: sci-ATAC-seq data of human fetal tissues:…Available supplemental data: websiteFile format: other formatData summary: Human chromatin accessibility during developmentPublication
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Hannah J Perrin, Kevin W Currin, Swarooparani Vadlamudi, et al.
PLoS Genet. 2021-10-26;17(10):e1009865.
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Jian Yan, Yunjiang Qiu, André M. Ribeiro dos Santos, et al.
Nature. 2021-1-27;
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Alexandro E Trevino, Fabian Müller, Jimena Andersen, et al.
Cell. 2021-09-16;184(19):5053-5069.
Available supplemental data: websiteData summary: Data used for the analyses presented in this work are available under GEO: GSE162170 and on a…Available supplemental data: websiteData summary: BPNet code can be found at GitHub.Available supplemental data: websiteData summary: A supplementary website with references to the data, code repositories and tools for interactive…Publication
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Joshua Chiou, Ryan J Geusz, Mei-Lin Okino, et al.
Nature. 2021-05-19;594(7863):398-402.
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Anthony Aylward, Mei-Lin Okino, Paola Benaglio, et al.
PLoS Genet. 2021-05-13;17(5):e1009531.
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Joseph Nasser, Drew T. Bergman, Charles P. Fulco, et al.
Nature. 2021-04-07;593:238–243.
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Carles A Boix, Benjamin T James, Yongjin P Park, et al.
Nature. 2021-02-03;590(7845):300-307.
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The ENCODE Project Consortium, Jill E. Moore, Michael J. Purcaro, et al.
Nature. 2020-07-29;583(7818):699–710.
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Wouter Meuleman, Alexander Muratov, Eric Rynes, et al.
Nature. 2020-07-29;584(7820):244–251.
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Daniel Richard, Zun Liu, Jiaxue Cao, et al.
Cell. 2020-04-16;181(2):362-381.
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Adrian Veres, Aubrey L Faust, Henry L Bushnell, et al.
Nature. 2019-05-01;569(7756):368-373.
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Elizabeth H Finn, Gianluca Pegoraro, Hugo B Brandão, et al.
Cell. 2019-03-07;176(6):1502-1515.e10.
Data summary: The Hi-C data has been deposited in GEO under ID code GSE107051, and in the 4D Nucleome data…Publication
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Shouneng Peng, Maya A. Deyssenroth, Antonio F. Di Narzo, et al.
PLoS Genet. 2018-12-31;14(12):e1007799.
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Benjamin J Schmiedel, Divya Singh, Ariel Madrigal, et al.
Cell. 2018-11-29;175(6):1701-1715.e16.
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Cassandra N Spracklen, Jinxiu Shi, Swarooparani Vadlamudi, et al.
PLoS Genet. 2018-04-05;14(4):e1007275.
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Martin Enge, H. Efsun Arda, Marco Mignardi, et al.
Cell. 2017-10-05;171(2):321-330.
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Victor Rusu, Eitan Hoch, Josep M Mercader, et al.
Cell. 2017-06-29;170(1):199-212.e20.
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Boris Novakovic, Ehsan Habibi, Shuang-Yin Wang, et al.
Cell. 2016-11-17;167(5):1354-1368.e14.