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Showing 25 of 26 results
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Charles A Herring, Rebecca K Simmons, Saskia Freytag, et al.
Cell. 2022-10-31;185(23):4428-4447.
Available supplemental data: websiteFile format: other formatData summary: Single-nuclei RNA-seq and single-nuclei ATAC-seq data have been deposited at GEO under accession…Available supplemental data: websiteData summary: Accompanying interactive browsers for this study are available at http://brain.listerlab.org.Available supplemental data: websiteData summary: All data for the Velmeshev et al. study is publicly available through the Sequence Read Archive,…Available supplemental data: websiteData summary: All original code has been deposited at Zenodo and is publicly available as of the date of…Available supplemental data: websiteData summary: Any additional information required to reanalyze the data reported in this work paper is available…Publication
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Ana Uzquiano, Amanda J Kedaigle, Martina Pigoni, et al.
Cell. 2022-09-29;185(20):3770-3788.e27.
Available supplemental data: websiteData summary: Read-level data from scRNA-seq, scATAC-seq, SHARE-seq, and Slide-seq data, supporting the findings…Available supplemental data: websiteData summary: The count-level data and meta-data have been deposited at the Single Cell Portal.Available supplemental data: websiteData summary: Supplemental data related to Figures 1, ,3,3, ,4,4, ,5,5, ,6,6, and and77 has been deposited…Available supplemental data: websiteData summary: Code used during data analysis is available at GitHub. d Any additional information required to…Available supplemental data: websiteData summary: Data from previous publications that was used in this study can be found at the Gene Expression…Publication
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Marianna Zazhytska, Albana Kodra, Daisy A Hoagland, et al.
Cell. 2022-03-17;185(6):1052-1064.e12.
Available supplemental data: websiteData summary: Human and hamster RNAseq, scRNAseq, in situ HiC, supplemental spreadsheets and detailed…Data summary: This study did not generate custom computer code. Any additional information is available from…Publication
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Kai Zhang, James D. Hocker, Michael Miller, et al.
Cell. 2021-11-08;S0092-8674(21):01279-4.
Available supplemental data: websiteFile format: other formatData summary: sci-ATAC-seq data of human lung samples: dbGaP: phs001961Available supplemental data: websiteFile format: other formatData summary: sci-ATAC-seq data of human heart samples: dbGaP: phs002204Available supplemental data: websiteFile format: other formatData summary: sci-ATAC-seq data of human islet samples: GEO: GSE160472Available supplemental data: websiteFile format: other formatData summary: sci-ATAC-seq data of human fetal tissues:…Available supplemental data: websiteFile format: other formatData summary: sci-ATAC-seq data of human fetal tissues:…Available supplemental data: websiteFile format: other formatData summary: sci-ATAC-seq data of human fetal tissues:…Available supplemental data: websiteFile format: other formatData summary: Human chromatin accessibility during developmentPublication
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Hannah J Perrin, Kevin W Currin, Swarooparani Vadlamudi, et al.
PLoS Genet. 2021-10-26;17(10):e1009865.
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Alexandro E Trevino, Fabian Müller, Jimena Andersen, et al.
Cell. 2021-09-16;184(19):5053-5069.
Available supplemental data: websiteData summary: Data used for the analyses presented in this work are available under GEO: GSE162170 and on a…Available supplemental data: websiteData summary: BPNet code can be found at GitHub.Available supplemental data: websiteData summary: A supplementary website with references to the data, code repositories and tools for interactive…Publication
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Anthony Aylward, Mei-Lin Okino, Paola Benaglio, et al.
PLoS Genet. 2021-05-13;17(5):e1009531.
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Daniel Richard, Zun Liu, Jiaxue Cao, et al.
Cell. 2020-04-16;181(2):362-381.
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Parker C Wilson, Haojia Wu, Yuhei Kirita, et al.
Proc Natl Acad Sci U S A. 2019-09-24;116(39):19619-19625.
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Judhajeet Ray, Paul R Munn, Anniina Vihervaara, et al.
Proc Natl Acad Sci U S A. 2019-09-24;116(39):19431-19439.
Available supplemental data: websiteData summary: Hi-C. Human K562 and Drosophila S2 cells were subjected to HS or not (NHS) and cross-linked with…Publication
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Elizabeth H Finn, Gianluca Pegoraro, Hugo B Brandão, et al.
Cell. 2019-03-07;176(6):1502-1515.e10.
Data summary: The Hi-C data has been deposited in GEO under ID code GSE107051, and in the 4D Nucleome data…Publication
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Shouneng Peng, Maya A. Deyssenroth, Antonio F. Di Narzo, et al.
PLoS Genet. 2018-12-31;14(12):e1007799.
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Benjamin J Schmiedel, Divya Singh, Ariel Madrigal, et al.
Cell. 2018-11-29;175(6):1701-1715.e16.
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Cassandra N Spracklen, Jinxiu Shi, Swarooparani Vadlamudi, et al.
PLoS Genet. 2018-04-05;14(4):e1007275.
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Martin Enge, H. Efsun Arda, Marco Mignardi, et al.
Cell. 2017-10-05;171(2):321-330.
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Victor Rusu, Eitan Hoch, Josep M Mercader, et al.
Cell. 2017-06-29;170(1):199-212.e20.
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Boris Novakovic, Ehsan Habibi, Shuang-Yin Wang, et al.
Cell. 2016-11-17;167(5):1354-1368.e14.
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Chen L, Ge B, Casale FP, et al.
Cell. 2016-11-17;167(5):1398-1414.
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Genetic Ancestry and Natural Selection Drive Population Differences in Immune Responses to PathogensYohann Nédélec, Joaquín Sanz, Golshid Baharian, et al.
Cell. 2016-10-20;167(3):657-669.e21.
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Zhuo Chen, Feng Miao, Andrew D Paterson, et al.
Proc Natl Acad Sci U S A. 2016-05-24;113(21):E3002-11.
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Raymond E. Soccio, Eric R. Chen, Satyajit R. Rajapurkar, et al.
Cell. 2015-07-02;162(1):33-44.
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Olga Sazonova, Yuqi Zhao, Sylvia Nürnberg, et al.
PLoS Genet. 2015-05-28;11(5):e1005202.
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Suhas S.P. Rao, Miriam H. Huntley, Neva C. Durand, et al.
Cell. 2014-12-18;159(7):1665-1680.
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Federico Innocenti, Gregory M Cooper, Ian B Stanaway, et al.
PLoS Genet. 2011-05-26;7(5):e1002078.
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Tarjei S. Mikkelsen, Zhao Xu, Xiaolan Zhang, et al.
Cell. 2010-10-01;143(1):156-169.