Search – Common Metabolic Diseases Genome Atlas

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Publication
released
Multimodal cell atlas of the ageing human skeletal muscle
Yiwei Lai, Ignacio Ramírez-Pardo, Joan Isern, et al.
Nature. 2024-04-22;
- PMID:38649488
- doi:10.1038/s41586-024-07348-6
Data summary: All raw data have been deposited to CNGB Nucleotide Sequence Archive (CNP0004394, CNP0004395,…
URL: https://db.cngb.org/cdcp/hlma/
Data summary: All processed data are available at the Human Muscle Ageing Cell Atlas database.
URL: https://github.com/MGI-tech-bioinformatics/DNBelab_C_Series_HT_scRNA-analysis-software
Data summary: All data were analysed using standard programs and packages, as described in the Methods. Custom…
URL: https://github.com/123anjuan/HMA
Data summary: Analysis of the generated data82.
Publication
released
Deconstruction of rheumatoid arthritis synovium defines inflammatory subtypes
Fan Zhang, Anna Helena Jonsson, Aparna Nathan, et al.
Nature. 2023-11-08;623(7987):616-624.
URL: https://doi.org/10.7303/syn52297840
Data summary: CITE-seq single-cell expression matrices and sequencing and bulk expression matrices are available…
URL: https://arkportal.synapse.org/Explore/Datasets/DetailsPage?id=syn52297840
Data summary: Associated genotype and clinical data are available through the Arthritis and Autoimmune and…
URL: https://immunogenomics.io/ampra2/
Data summary: A cell browser website is available to visualize our data and results.
Data summary: AMP Phase 1 single-cell data from ref. 8 are available on Immport (SDY998). PEAC clinical trial…
URL: https://github.com/Immunogenomics/RA_Atlas_CITEseq/
Data summary: The source code for the analyses is available at GitHub
URL: https://zenodo.org/record/8118599
Data summary: The source code for the analyses is available at zenodo
Publication
released
Cohesin-mediated loop anchors confine the locations of human replication origins
Daniel J Emerson # 1 2 3 , Peiyao A Zhao # 4 , Ashley L Cook # 1 2 3 , et al.
Nature. 2022-06-08;606(7915):812-819.
Data summary: All new raw data created in this manuscript have been uploaded to the 4D Nucleome portal and will…
Publication
released
Systematic analysis of binding of transcription factors to noncoding variants
Jian Yan, Yunjiang Qiu, André M. Ribeiro dos Santos, et al.
Nature. 2021-1-27;
- doi:10.1038/s41586-021-03211-0
- PMID:33505025
Publication
released
Large-scale genetic association and single cell accessible chromatin mapping defines cell type-specific mechanisms of type 1 diabetes risk
Joshua Chiou, Ryan J Geusz, Mei-Lin Okino, et al.
Nature. 2021-05-19;594(7863):398-402.
- doi:10.1038/s41586-021-03552-w
- PMID:34012112
Publication
released
Genome-wide enhancer maps link risk variants to disease genes
Joseph Nasser, Drew T. Bergman, Charles P. Fulco, et al.
Nature. 2021-04-07;593:238–243.
- doi:10.1038/s41586-021-03446-x
Publication
released
A molecular quantitative trait locus map for osteoarthritis
Julia Steinberg, Lorraine Southam, Theodoros I. Roumeliotis, et al.
Nature Communications. 2021-02-26;12(1):1309.
- doi:10.1038/s41467-021-21593-7
- PMID:33637762
URL: https://msk.hugeamp.org/downloads.html
URL: https://hmgubox.helmholtz-muenchen.de/d/fc1fcf65a6724152b7f9/
Publication
released
Regulatory genomic circuitry of human disease loci by integrative epigenomics
Carles A Boix, Benjamin T James, Yongjin P Park, et al.
Nature. 2021-02-03;590(7845):300-307.
Publication
released
Expanded encyclopaedias of DNA elements in the human and mouse genomes
The ENCODE Project Consortium, Jill E. Moore, Michael J. Purcaro, et al.
Nature. 2020-07-29;583(7818):699–710.
Publication
released
Index and biological spectrum of human DNase I hypersensitive sites
Wouter Meuleman, Alexander Muratov, Eric Rynes, et al.
Nature. 2020-07-29;584(7820):244–251.
Publication
released
An integrated multi-omics approach identifies the landscape of interferon-α-mediated responses of human pancreatic beta cells
Maikel L. Colli, Mireia Ramos-Rodríguez, Ernesto S. Nakayasu, et al.
Nature Communications. 2020-05-22;11(1):2584.
Publication
released
A Single-nucleus RNA-sequencing Pipeline to Decipher the Molecular Anatomy and Pathophysiology of Human Kidneys
Blue B. Lake, Song Chen, Masato Hoshi, et al.
Nature Communications. 2019-06-27;10(2832(2019))
- doi:10.1038/s41467-019-10861-2
- PMID:31249312
URL: https://www.nature.com/articles/s41467-019-10861-2
Publication
released
Pancreatic Islet Chromatin Accessibility and Conformation Reveals Distal Enhancer Networks of Type 2 Diabetes Risk
William W Greenwald, Joshua Chiou, Jian Yan, et al.
Nature Communications. 2019-05-07;10, Article number: 2078 (2019)
- doi:10.1101/299388
- PMID:31064983
URL: https://www.nature.com/articles/s41467-019-09975-4
Publication
released
Charting cellular identity during human in vitro β-cell differentiation
Adrian Veres, Aubrey L Faust, Henry L Bushnell, et al.
Nature. 2019-05-01;569(7756):368-373.
Publication
released
Dynamics of Genome Reorganization During Human Cardiogenesis Reveal an RBM20-dependent Splicing Factory
Alessandro Bertero, Paul A. Fields, Vijay Ramani, et al.
Nature Communications. 2019-04-04;10(1):1538.
URL: https://www.nature.com/articles/s41467-019-09483-5
Publication
released
Genome-scale Capture C promoter interactions implicate effector genes at GWAS loci for bone mineral density
Alessandra Chesi, Yadav Wagley, Matthew E. Johnson, et al.
Nature Communications. 2019-03-19;10(1):1260.
URL: https://www.nature.com/articles/s41467-019-09302-x
Publication
released
Cardiomyocyte Gene Programs Encoding Morphological and Functional Signatures in Cardiac Hypertrophy and Failure
Seitaro Nomura, Masahiro Satoh, Takanori Fujita, et al.
Nature Communications. 2018-10-30;9(4435(2018))
- doi:10.1038/s41467-018-06639-7
- PMID:30375404
URL: https://www.nature.com/articles/s41467-018-06639-7
Publication
released
Single Cell RNA Sequencing of Human Liver Reveals Distinct Intrahepatic Macrophage Populations
Sonya A. MacParland, Jeff C. Liu, Xue-Zhong Ma, et al.
Nature Communications. 2018-10-22;9(4383)
- doi:10.1038/s41467-018-06318-7
- PMID:30348985
URL: https://www.nature.com/articles/s41467-018-06318-7#content
Publication
released
Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator
Jérôme Carayol, Christian Chabert, Alessandro Di Cara, et al.
Nature Communications. 2017-12-12;8(1):2084.
Publication
released
Bivariate genome-wide association meta-analysis of pediatric musculoskeletal traits reveals pleiotropic effects at the SREBF1/TOM1L2 locus
Carolina Medina-Gomez, John P. Kemp, Niki L. Dimou, et al.
Nature Communications. 2017-07-25;8(1):121.
Publication
released
The Genetic Regulatory Signature Of Type 2 Diabetes In Human Skeletal Muscle
Laura J. Scott, Michael R. Erdos, Jeroen R. Huyghe, et al.
Nature Communications. 2016-06-29;7:Article number: 11764 (2016).
- doi:10.1038/ncomms11764
- PMID:27353450
Publication
released
Integrative analysis of haplotype-resolved epigenomes across human tissues
Danny Leung, Inkyung Jung, Nisha Rajagopal, et al.
Nature. 2015-02-19;518(7539):350-354.
Publication
released
A common Greenlandic TBC1D4 variant confers muscle insulin resistance and type 2 diabetes
Ida Moltke, Niels Grarup, Marit E Jørgensen, et al.
Nature. 2014-08-14;512(7513):190-3.
- doi:10.1038/nature13425
- PMID:25043022
Publication
released
Transcriptome and genome sequencing uncovers functional variation in humans
Tuuli Lappalainen, Michael Sammeth, Marc R Friedländer, et al.
Nature. 2013-09-26;501(7468):506-11.
Publication
released
Biological, clinical and population relevance of 95 loci for blood lipids
Tanya M Teslovich, Kiran Musunuru, Albert V Smith, et al.
Nature. 2010-08-05;466(7307):707-13.
URL: http://csg.sph.umich.edu/willer/public/lipids2010/

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Showing 25 of 26 results