Search – Common Metabolic Diseases Genome Atlas

Showing 21 of 21 results

Pipeline
DPL255HPT
active
scRNA-seq clustering for HPAP dataset
Pipeline
DPL066WNI
active
Pseudo-bulk gene expression and differential activity (Elgamal et al.)
Assays: single cell isolation followed by RNA-seq
Pipeline
DPL472KCS
active
Annotation pipeline popularVote (popV for short) from Tabula Sapiens
Assays: single cell isolation followed by RNA-seq
Pipeline
DPL126DIZ
active
Pipeline holder for unknown or undefined pipeline
Pipeline
DPL005RCG
active
A short overview of the main analysis steps for eQTL Catalogue
Assays: RNA-seq, whole genome sequencing assay
Software:
Pipeline
DPL269LNG
active
RNA-seq Pipeline 2 (Single-ended, ENCODE)
Assays: RNA-seq
Software:
Pipeline
DPL608JFY
active
TF ChIP-seq Pipeline 2 (ENCODE unreplicated)
Assays: ChIP-seq, Mint-ChIP-seq
Software:
Pipeline
DPL935TZE
active
TF ChIP-seq Pipeline 2 (ENCODE replicated)
Assays: ChIP-seq, Mint-ChIP-seq
Software:
Pipeline
DPL721SCW
active
Histone ChIP-seq Pipeline 2 (ENCODE unreplicated)
Assays: ChIP-seq, Mint-ChIP-seq
Software:
Pipeline
DPL172PKH
active
RNA-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
Assays: RNA-seq
Software:
Pipeline
DPL064PJG
active
Histone ChIP-seq Pipeline 2 (ENCODE replicated)
Assays: ChIP-seq, Mint-ChIP-seq
Software:
Pipeline
DPL707AXE
active
ATAC-seq Pipeline (ENCODE replicated)
Assays: ATAC-seq
Software:
Pipeline
DPL121OYY
active
ATAC-seq Pipeline Gaulton Lab
Assays: ATAC-seq
Software:
Pipeline
DPL779IGH
active
ATAC-seq Pipeline Cebola Lab (Hepatocytes)
Assays: ATAC-seq
Software:
Pipeline
DPL450NWL
active
RNA-seq Pipeline Cebola Lab
Assays: RNA-seq
Software:
Pipeline
DPL118KGX
active
ChIP-seq Pipeline Ellinor Lab
Assays: ChIP-seq
Software:
Pipeline
DPL245EPK
active
ChIP-seq Pipeline Cebola Lab
Assays: ChIP-seq
Software:
Pipeline
DPL403RWM
active
ChIP-seq Pipeline (ENCODE)
Assays: ChIP-seq
Software:
Pipeline
DPL610SXT
active
RNA-seq Pipeline (Paired-ended, ENCODE)
Assays: RNA-seq
Software:
Pipeline
DPL610SXTsingleended
active
RNA-seq Pipeline (Single-ended, ENCODE)
Assays: RNA-seq
Software:
Pipeline
DPL967MZM
active
ATAC-seq Pipeline (ENCODE unreplicated)
Assays: ATAC-seq
Software:

Assay

Pipeline status

Pipeline groups

Developed by

analysis_steps.versions.software_versions.software.title!

assay_term_names!

title!

Showing 21 of 21 results